Official symbol | PSME1 |
Gene id | 5720 |
Organism | Homo sapiens |
Official full symbol | proteasome activator subunit 1 |
Gene type | protein-coding |
Also known as | HEL-S-129m, IFI5111, PA28A, PA28alpha, REGalpha |
Summary | The 26S proteasome is a multicatalytic proteinase complex with a highly ordered structure composed of 2 complexes, a 20S core and a 19S regulator. The 20S core is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. The 19S regulator is composed of a base, which contains 6 ATPase subunits and 2 non-ATPase subunits, and a lid, which contains up to 10 non-ATPase subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. The immunoproteasome contains an alternate regulator, referred to as the 11S regulator or PA28, that replaces the 19S regulator. Three subunits (alpha, beta and gamma) of the 11S regulator have been identified. This gene encodes the alpha subunit of the 11S regulator, one of the two 11S subunits that is induced by gamma-interferon. Three alpha and three beta subunits combine to form a heterohexameric ring. Alternative splicing results in multiple transcript variants. |
Genomic regions | Chromosome 14 |
Name | Transcript ID | bp | Protein | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
PSME1-202 | ENST00000382708.7 | 1136 | 250aa | Protein coding | CCDS41930 | Q06323-2 | - | TSL:2, GENCODE basic, |
PSME1-201 | ENST00000206451.11 | 965 | 249aa | Protein coding | CCDS9612 | Q06323-1 | NM_006263.4 | TSL:1, GENCODE basic, APPRIS P1, MANE Select v0.92, |
PSME1-210 | ENST00000561435.5 | 945 | 233aa | Protein coding | CCDS61415 | Q06323-3 | - | TSL:2, GENCODE basic, |
PSME1-205 | ENST00000559123.5 | 1033 | 90aa | Protein coding | - | H0YKK6 | - | TSL:5, GENCODE basic, |
PSME1-204 | ENST00000558112.1 | 651 | 114aa | Nonsense mediated decay | - | H0YLU2 | - | CDS 5' incomplete, TSL:5, |
PSME1-203 | ENST00000470718.5 | 476 | No protein | Processed transcript | - | - | - | TSL:3, |
PSME1-208 | ENST00000561059.5 | 947 | No protein | Retained intron | - | - | - | TSL:2, |
PSME1-207 | ENST00000560420.1 | 922 | No protein | Retained intron | - | - | - | TSL:2, |
PSME1-209 | ENST00000561142.5 | 865 | No protein | Retained intron | - | - | - | TSL:5, |
PSME1-206 | ENST00000559741.5 | 763 | No protein | Retained intron | - | - | - | TSL:3, |
Target Gene | PSME1 |
This KO Strategy | loading |
Red Cotton™ Notes | Gene PSME1 had been KO in hek293t cell line. |
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